NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272423_1002838

Scaffold Ga0272423_1002838


Overview

Basic Information
Taxon OID3300033168 Open in IMG/M
Scaffold IDGa0272423_1002838 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16889
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (23.53%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-74.2Long. (o)162.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009580Metagenome315Y
F028667Metagenome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0272423_10028386F028667N/AMTRDSESVESRTARLLRSIASKXVSLISFNASARSQNVAISXNINMSQQLRQXVIDQSDKIIKMLIELRNQXNMTLKLNEQXINLQVNHIKRLDELKINQMTIDTQEETIIELQEKVLSLKKKQRSTNYSRSRQSTKSXASIENHTRQESFTLFDNDHHKFFKFSNSSIFTDEDESTXDSXRVKINDKLQTNVDHFNNENICIVYVIYRLEDDAAEHIFAXCXHDALHSYISINELFEHLKEIYDKLNKNRKCCCKYNALRQADKSFNVFYFDFMKLFSYLEYNDRILMNDLQNKINNRLQNALSVCSENFTSLTRLRIFLQDVNSKQRVNYQLRSERRTVIVKVTVIPDKRVTSLSVTTLIINYVKSIISSISESAKSSIICYICKIFDHLFKNCSQLNKIDTFASYAFISRLHEIIISKNNENEKMSFENSEAKN
Ga0272423_10028388F009580GAGMICIQISERDLTQKLNFSCRQRDFFIYIDDVTIVDIYDTQSEELFIXAFFNDFAQMLQLAVVAQLSLVADFLDLRNDQSLILNDDNDKA
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