Scaffold Ga0272423_1002389

Overview

Basic Information

• Taxon OID: 3300033168
• Scaffold ID: Ga0272423_1002389
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18693
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -74.2
  • Long. (^o): 162.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019222	Metagenome / Metatranscriptome	231	Y
F028304	Metagenome / Metatranscriptome	192	Y
F037922	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272423_100238915	F037922	AGGAGG	MQELPKIETPKQAKEVLLGRDEEREITVELGEWTASIKKHNNQEFSAKFAYQETGIISLRDASHILLKHGDYDLYFD
Ga0272423_100238916	F019222	AGGAG	MSEDFKGREISVKEYGQRTLNAARLYSLLRQECEIEDPWHIIVLAICSFEQEHPKDGWEFVLANRKDIEDVGRLFERSNSQEEFREGLIELKERDLREQLEREDLR
Ga0272423_100238917	F028304	GAG	MMTTRRESREYIKQTLADLGWEVRKDDDDSDAIVRGYGKYHLMVNFRSEDPVSVIVSYVGKGGEILSRKWPGVERLPAPQSVVRIFSKNS