Scaffold Ga0272423_1001850

Overview

Basic Information

• Taxon OID: 3300033168
• Scaffold ID: Ga0272423_1001850
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21840
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (22.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -74.2
  • Long. (^o): 162.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020121	Metagenome	225	Y
F021026	Metagenome	220	Y
F036035	Metagenome	170	Y
F048018	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272423_100185012	F036035	N/A	MKDDEMQREHHELEKVSRNHERDDNNHSNNTFDKHTESISDCDIIKESNERKKK
Ga0272423_100185019	F020121	N/A	MKKLTEHLHDEMLITQIIYEFNINLSYHSCFKYFVKDEVXLNVCNLSIIHLTVKLNNHNVDFFKIKHVFKNNFLIIELNLSTFMKIHSIFHVILLNHIASDFLSNQHQKSQELIIIKNDKRFXYINSILNFKHDKCYNSSLLKYYINXKNHFST
Ga0272423_10018507	F048018	GAG	MIXRRSLFKLSRYFLSXKYRXFSCSSHSTREILLXCRALLRSASIIXAANLSLISTCFHNVXVRVSAESSSRFRVSXFSXDLMFSTLNSLISRFIRTKICKSAKIIENRCNXTESRMMIYDXSFMTLMLKMLKVKFLIILRSKIXVFRIV
Ga0272423_10018509	F021026	N/A	MIVFCILRQAQSRVFTFALIDSKVFAYVFINKFFTQQHHLFLHQLTHFCRLXEFDDQVTLINDITYVVKITIILNEHIEKLFFYVIELSQYLIIMSLSXLHHHVIDVHFEHNILILFFFFCLNHYCQFLVKIYDFNQQDENFLLEVNKVAFFQSHSQFAYKK