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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033168 Open in IMG/M |
| Scaffold ID | Ga0272423_1001809 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 22113 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (16.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -74.2 | Long. (o) | 162.5 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008735 | Metagenome | 328 | Y |
| F009580 | Metagenome | 315 | Y |
| F021216 | Metagenome | 219 | Y |
| F036035 | Metagenome | 170 | Y |
| F038009 | Metagenome | 166 | Y |
| F040408 | Metagenome | 161 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272423_100180912 | F036035 | N/A | MKDRIKDDVIXREHHELEKASRNHERDDSNHSNNILNKHTESISDCDIIKESNERKRK |
| Ga0272423_100180913 | F040408 | N/A | MYDYELIFDIYIENDAMKEEVSAAKKHIKMLQNMXNILT |
| Ga0272423_100180920 | F021216 | N/A | MKSRMKSNAMRRKHHELEKAFRNHECSNDDHLNDIFNKHTESISSCNIIKESNERERK |
| Ga0272423_100180921 | F008735 | N/A | MSLLIYDESXLNIDDLDSMKEVMIIIHVDALYQTLFSCIQLIFVSLIFRYIEKLLESKSDEDSDRICKEVNDEKRLIVQDLCNDLSYHCKKLRIQLYINXRTENDEXKXDDDIMLLNLILKLLHYAKDLNXIFDHTLSELFNSMLIINXEIMKQLYLSKRVTKXDFNVXKRCRKCKSFVMSETELD |
| Ga0272423_100180923 | F009580 | GAG | MIYIQISERDLAQKLNFSCEQRDFFIYTDDVTVVDVHDTQSEELLIXAFFSNFAQMLQLAVVTQLSLVADFLDLRNDQNLILNDDNNKA |
| Ga0272423_100180924 | F038009 | N/A | LIELICLKNNRSSREKKISTLDFXXVFFLNDLKNTTRSFLFQTRDKIERNLFLVNELSISXLFISKRKVILLLVSRXETELLLASELRTELLFMSELKTELLLSSKXEIKLLLVNELKTEILLLSEXETKLLLTSKLSAELLLVSNL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |