Scaffold Ga0272423_1001693

Overview

Basic Information

• Taxon OID: 3300033168
• Scaffold ID: Ga0272423_1001693
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23078
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (46.15%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -74.2
  • Long. (^o): 162.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013598	Metagenome	269	Y
F021452	Metagenome	218	Y
F036036	Metagenome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272423_10016932	F021452	GAG	MLIFCFINMFDDSFDFKSFIMNIILSSLEKIFRFLALINIEVTDMMFINNSLISELCECFDIQSISLFKSKTIRSYDKIFNRRFITHALYISVTIQEHKNEMMSLLITRLDQHKIIIDNF
Ga0272423_100169325	F036036	N/A	MLVSLIHHLFSCFNQSFMSEDQCLVHLFIYILSSINLQAFASAFILDDVRVEAHTRMKVLVHEEENQEDD
Ga0272423_100169326	F013598	N/A	MNFIIDLFNSSEYNAILTIICRLSKERHYISCIIDDENITVEKTAEMLIQ