Scaffold Ga0272423_1001074

Overview

Basic Information

• Taxon OID: 3300033168
• Scaffold ID: Ga0272423_1001074
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30224
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (24.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -74.2
  • Long. (^o): 162.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F089602	Metagenome	108	Y
F094625	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272423_100107443	F001951	N/A	MTKLKFIDSSRNKKEKNKDTVETTVTEMMIFELKELLINAKTSLTLMNKIMMKIKXN
Ga0272423_100107444	F089602	N/A	MKDEXSSFIEISLKEDDNLSEIIDIMLQTINQXEIFHQRTFFLLIEEIVVVNKAIHVLLQSFAKI
Ga0272423_100107445	F094625	N/A	MIENSVKIFRVMQKLQNQVQQHDVIISSSFIILNSSVYIELNSQSFVMMIQIIIQILNNQSLLIIHFSANFVAVFIASRFKKLLDIFEYEKNKDQLNAXEQSLIQRMNMNNDHYFLHRVKIIYVES