Scaffold Ga0272423_1000997

Overview

Basic Information

• Taxon OID: 3300033168
• Scaffold ID: Ga0272423_1000997
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31648
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (45.16%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -74.2
  • Long. (^o): 162.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010214	Metagenome	306	Y
F048018	Metagenome	148	Y
F074204	Metagenome	119	Y
F076668	Metagenome	117	Y
F086375	Metagenome	110	Y
F094625	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272423_10009971	F048018	GAG	MTLSXASXMIQRRSLSELSTYFLSXKYRXFSCSSYLTKEILLXCCASLQSALIIXAANLSLISTCFYNVXVKISAESSSRFRMSXSSXDLTSSTSNSLIFKFMKTRICKSAEIIENRCNXTESRTMICDXSFMTLMLKMSRARFSTILRSKTXVFRIVXYXYXCQESNVFLSLKRSSEXCVRAFNLSSILSKX
Ga0272423_100099710	F086375	N/A	MFTLFVNSKSIASXNRDENWFNEIKEHYKRQNNDHVIIFKXLHKLRQFNVLKEVNEIDKAAMKDNVRDEIEQKRKNKDIHDNASQ
Ga0272423_100099711	F076668	GAG	MHSTDHYAIKKTSVFKSTTTTKKIMHMSNALSTDIIMLCNRKDATNQTLLRCAKFENIRKSQKISFSKXSSKDXLERLCMIMLERTCYNMIFAFSTLSXVLFKKSLKTLCASLXKVSALLFCIITFVIEFSLTFCSMQTSTXQQFMSNASSFKIEIXDLXRISXXILMSCFSRQTRKCLSSSIK
Ga0272423_100099728	F010214	GAG	MKVSVLFDYDTSSLLCSSLMIFYTTMFXFNSXFKDERCFLCIHDAHDCNICRAAFSYSMIVIHXAEKYMMKERCTXXEDKVXLYXVILFFFXFNLCHINVELIVSINVQSQSFDVXLXSMKENAFXLFSXALNFSHK
Ga0272423_10009973	F074204	N/A	LIDNEVFAYVFINKFFAQQHHFFLHQLIHSCRLQEFDDQVALIDDITYVIEITMILDEHIEKLFFYVTELSQYLIIMSLS
Ga0272423_10009975	F094625	N/A	MKLSHNLLIDDEHAVEQFTQSMIENSVEIFHAMHELQNQVRQYDVIILFSFIIFSSSIYIELNSQSLATIAQIIAQILNNQSSFVVHLFVNSVAVFIASRFKKLLNISEYERNKDXLNAXKQNLIQRMNMNDDHYFSHQVKIIYVESXLIIDKKTHNSMNQYRVNDLCIIFIFTDX