NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272423_1000842

Scaffold Ga0272423_1000842


Overview

Basic Information
Taxon OID3300033168 Open in IMG/M
Scaffold IDGa0272423_1000842 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35249
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (52.83%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-74.2Long. (o)162.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021452Metagenome218Y
F025887Metagenome199Y
F065269Metagenome127Y
F079402Metagenome115Y
F098340Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0272423_100084214F025887N/AMSDDSFNFKSFIVDIILNSLKKIFRSFALINTKVTDMTFIDESLMLKLCECFDIQSISLSKSKLI
Ga0272423_100084215F098340N/AMIEVAVYQTLVKNKKIKIFFLIISEINKALSSVEDFAKLNEMISVMSLNELKKRLSIIYHDFLNVFDKEKITQLLLHRSYDHKIELEEKSQSSRS
Ga0272423_100084221F025887N/AMTENDILIFCFISMPDDSFDFKSFTVDVILNSLEKIFRSLALINTEVTDMTFIDESLMSELCERFDIQSISLSKLKSIQLYDEISD
Ga0272423_100084222F065269N/AMTRSSESVSIARYDFQNARRESLLSQNRTASEEEDTNASSNTEEKNMNVLFFDHEMIKISINTELNA
Ga0272423_100084225F079402N/AMQNKLKMNKNHFSIKEMKIAYVKSRVSETMIKHIASRMKNMITNSFLEAEEILSIINKMYDNLN
Ga0272423_100084226F021452GAGMLISCFISMLDDSFDFKSFIVDVILNSLKKIFRFLVLIDIEVTDMTFIDDSLVSELCERFDIQSISLFKSKSIHSYDEIFDRRFITHALYISITIQEHKNEIMSLLITRLD
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