Scaffold Ga0272423_1000698

Overview

Basic Information

• Taxon OID: 3300033168
• Scaffold ID: Ga0272423_1000698
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40349
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (18.75%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -74.2
  • Long. (^o): 162.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008668	Metagenome	329	Y
F009580	Metagenome	315	Y
F021026	Metagenome	220	Y
F028368	Metagenome	191	Y
F048018	Metagenome	148	Y
F076668	Metagenome	117	Y
F100079	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272423_100069816	F048018	N/A	MILSXVSXMIXRHSLSELSTYFLSXKYKXFSCSLHSTKEILLXCHASLXSASIIXAANLSLISTCFYNVXVKMSAESSSRFRMSXFSXNLIFLTLNSLISKFMKIKIYKDAEIIKNRCNXTESKVMICDXSFMTLMLKMLKMRFSTILKSKTXIFRIVXCXYXC
Ga0272423_100069818	F021026	N/A	LKLFEFNLTFKNNHMIVFCILRQAQSKVLVLTLINSEVSAYVFMNKFFTQQHHFFLHQLIHSCRLXEFDDQVTLIDDIIHVVEITMILNEHLKRLFFYVIELSQYLIIMSLSXLHYHVIDVNFEHNILIFFFFCLNHCC
Ga0272423_100069819	F009580	AGCAG	MIEVRMKRLKLVDKMIYIQISERDLTQKLNFSCKQQNFFIYTDDVIVVNVHDMQSEELFIXAFFNNFAXMLQLAVVAHLSLVADFLDFRNDQNLILNDDNDKV
Ga0272423_10006982	F100079	N/A	MFRYRHFIHKXYVDEKTSLKEEKHKQVNKEXLNYAVXLEV
Ga0272423_100069840	F008668	N/A	MIFFYFNKEFHSQMSFNSNTTDYETTCERLEARKADDIVIXMKELLNFDHQQLKKTKLIIEIQINKHKXDVIYEVDDXV
Ga0272423_100069843	F028368	N/A	LKENYFEKSFLIDAYLISQNXSFSLHSLIDSDSVIYMIIHFNLVDKVCKKLKIQSILLTKEKLIRDYDEKIFKKIITHKILLNLIIESHKKLIISMLIADIDHHEVILSKLXMNKNEILLNMXNDIIVFSNQLNTSISIFSILFNSKHLNXSXSTSSSSITKIKIFMMLKXFIREESFLIXSIDAASFKTLLNCSKKNKIKVFALFMMNINRKITYNTQCDLNALNVFSINEMTQNLKDIKAKLSSKYHEFLDVFD
Ga0272423_100069848	F076668	N/A	MTCLLLTSSFLTHASARKTSKNSMHSTDHYVIKETSVFKSTITTKKIMHMNNALSTDILMLCNRKDATNQTLLRCAKFENIRRSQKISFSKXSSKDXLKRLCMIMLKRTCYNMIFAFSALSXVLFKKSLKTLYASLXKVSALLFRIITFVVEFSLTFCSMQTSTXQQFMSNASSF