Scaffold Ga0272423_1000675

Overview

Basic Information

• Taxon OID: 3300033168
• Scaffold ID: Ga0272423_1000675
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40902
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (18.75%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -74.2
  • Long. (^o): 162.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008735	Metagenome	328	Y
F009580	Metagenome	315	Y
F010214	Metagenome	306	Y
F020121	Metagenome	225	Y
F023763	Metagenome	208	Y
F036035	Metagenome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272423_100067518	F008735	N/A	MKEIMIIVHVHALYQTLLSCIQLIFVLLILRYIKKILESRSNENSDRICKRVNNEKRLIIQDLCNDLSYHCKRLRIQLYIDXRTENDEXEXNDNIMLLNLILKLLHYVKDLNXIFNHTLSKLFNSMLIIDXKIVRQLYLSERITRRDFNIXKRCRKCRSFIISETELN
Ga0272423_100067520	F009580	N/A	MICIQISERNLAQKLDFFRKQRDFFIYIDNITVVDVHDMQSEELLIXAFFNDFAXMLQLAVVAKLSLVANFLDFRNNQSFILNDDNDEV
Ga0272423_100067524	F023763	N/A	MLILMSRIECIFLFRKIFXVTCQSIQLIIDLVKMISNVIVEFRQKLTSMSLMTTQLLSXHEILKIFVICDHLDRIDKVFKLXSSFLESTNNDHEFFIVDLVVTLDXIMLLEKVSDXMKNLILIILKKNVFKHIVXSINFYYNLVIXIIMMKNNLESENFLKSVKCNLTFLRLDKEYIFSDEMNERNSYFTIVINESSIKVHEI
Ga0272423_100067527	F020121	N/A	MKKLTEHLCDEMLIAQIIYKFNVNLSHRSCFKYFVEDEVXLNACNFNITHFIVKLNDYNVDFFKIKRVFKNNFLIIELNLSAFMKIHSIFHVIFLNHITSDFLSSQRQKSXELIVIKNDERFXYVNSILNFKHDRCYNSSLLKYYINXKDHFSTXKSFHLLNNCEQVLNEYHLVNSVVKESHVLSCVISQCQYQKL
Ga0272423_100067541	F036035	N/A	MKDKMKDDATXKEHHELEKASKNHKHDDNDHLNDILDMNTVSISDCDIIKELDERERK
Ga0272423_100067548	F010214	N/A	MXCSSKLLMRASVLFDYDTSSLLCSSLMIFYTMMFQFNSRFKDKRCFLCIHDAHDCNIHRAVFSYSMIVIHXAEKYVMKERCTQXEDKVXMYXVILFFSXFDLCHVNVEXIVSINVQSQSFDNKFXSMKENAFXLFSXALNFSCE