Scaffold Ga0272423_1000625

Overview

Basic Information

• Taxon OID: 3300033168
• Scaffold ID: Ga0272423_1000625
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43340
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (32.65%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -74.2
  • Long. (^o): 162.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009580	Metagenome	315	Y
F075494	Metagenome	118	Y
F104134	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272423_100062513	F104134	N/A	MIFFXLFMFIVVHTSCVSIAKIQHATHVELVISFAHVXVFFRFAQASELTAXRKMSSLLSLRSDMIRFLXFVNTSAIFCRICSINFFYISFIFLLFIILIMTSHFLRSDDRSSLNRCFLVAISSLITFAHDVIFIERRVLLCVCNCLLNSXTDVFSFCTFFVMNAFXFTXCFSSELSXKRXISFNAISFHEXSLLFSFSNIDIFISRSIMLAMFFSLLHEHFDLVFLFSCNESTSLAIVFESALLRFMQFIVVQSSSRFTLPCL
Ga0272423_100062523	F075494	GAG	MFIHSISMNRYSAKHVESRLQDETHXXTXVINNVEKTFVHSVSERRYSAKHVKSRLQDEIYCTXVINEVEKISVHSVSENMNTCSAVHVRSMLLRVMILTMQEMHLDKVHFSRDKISQLESTTLKSTDVETLTYKDCNVAKKQFNSVAETVDCKQLVSCAIVRVLTIHETTYNFSSKFVVKLIKILQQEDEFTVRLKADETTSIQKNDVEAXTLNN
Ga0272423_100062545	F009580	GAG	MIYIQISEHDLAQRLNFSCKQRDFFIYIDDVTVINIHNMQSEKLLIXTFFSNFAXMLQLAVVTQLSLVVDFLDLRNDQNLILNDNNDKI