Scaffold Ga0272423_1000395

Overview

Basic Information

• Taxon OID: 3300033168
• Scaffold ID: Ga0272423_1000395
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56225
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (31.25%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -74.2
  • Long. (^o): 162.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003820	Metagenome	466	Y
F017767	Metagenome	238	Y
F021026	Metagenome	220	Y
F064254	Metagenome	128	Y
F086377	Metagenome	110	Y
F087979	Metagenome	109	Y
F104132	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272423_10003951	F104132	AGAAG	MNEILNFRIKNSQLEYLIKXTEIEENSXVKFANVMNVIEVINVYHARNLDRSNKNSXIAYVQESSNSEYESEN
Ga0272423_100039510	F003820	N/A	MKLFSYLEYDNHILMNDLQNKINNRLQNALSICSKNFTSLTRLRIFLQDVNSKQRVNYQLRSERCTVIIKVTVVSDKRATSLSITTLIINYVKSTIFSISESARSSIICYICNIFDHLFKNCFQLNKIDTSASCAFTSRLHEIIISKNKENEKMFFENNEAKN
Ga0272423_100039511	F017767	N/A	MKDVLISSTMSMSDDSFASESLTIECVLSSNEISYSLKSLIDIKAADYSFIDEVIAQIVC
Ga0272423_100039516	F087979	N/A	MKEKNENSAFIYMNXTESRLNNSFIDLKLQKFAHMIKMIETKLLKLN
Ga0272423_10003952	F086377	N/A	MIQHFXDQKQRILILDCDSVQISIVHTEVKFFFKFLDEENKDDHLKVTDLNEIFAQILIQITMKF
Ga0272423_100039520	F021026	N/A	MIVFCILHQAQSKVFILLIDSEIFAYIFMNKFFTQQHHLLLYQLTHSCRLQEFDDQVTLIHDIIHVVKITMILNEHIEKLFFYVIELSQYFIIMSLSXLHHHVIDVNFEHNILILSFFFCFNHYCSSLIKIYDLNQQEENFSFKVNKVAFFQSHSQFTHKK
Ga0272423_100039525	F064254	N/A	MQELYEFISFLFFLSFIXFFNDVTAXNXFSMLVESIIQMIIVAALMISKSFLKFVMFFSHCIAFHSTFHLKHVNKMCLIDIXSLSHLHVIIVTLNTRLSCRNXLKSIFVMHSCVNNALXNFAXFLCSCRCQYVIFDVKYXKXAALNFSFQITLHVCLICFCMSISLVITSVRXYSVRAIKTNHVCC