Scaffold Ga0272423_1000295

Overview

Basic Information

• Taxon OID: 3300033168
• Scaffold ID: Ga0272423_1000295
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 64383
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (26.32%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -74.2
  • Long. (^o): 162.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009580	Metagenome	315	Y
F021026	Metagenome	220	Y
F021216	Metagenome	219	Y
F038009	Metagenome	166	Y
F041516	Metagenome	159	Y
F096306	Metagenome	104	Y
F104134	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272423_100029512	F096306	N/A	MFAMYNNYAVDSLIIDDDSNDERSCKDNSELHASMILFNIMILIVTNVKIIFVESNDK
Ga0272423_100029527	F041516	N/A	MIMLQTLTDDTQTTQKAIHIHEAYNSSLRDHKVIHEKENLSNIEKMLQMLKECILVEDFNLHHFT
Ga0272423_100029537	F009580	AGCAG	MIEVRVKRLRLVDKIICIQIFERNLVQKLNFSCRQQDFFIYTDDITVINVHDMQSEELLIXAFFSDFAXMLQLAVVAQLSLVADFLNFRNDQSLILNNDNDEA
Ga0272423_100029538	F021026	N/A	LKLFEFNSTFKDSHMIVFCILRQAQSKVFTFALIDSEVFAYVFMNKFFTQQHHFLLHQLTHSCRLREFDDQATLINDITYVVEITMILDEHIEKLFFYVTKLSQYLIIMNLSXLHHHVINVNFEHNILILSFFFCLNHCC
Ga0272423_100029539	F038009	AGCAG	LNFQLNYVKLYKRLIELICLKENRSSKEKRISTLDFXXVFFLNDLKNMIKSFLFQTRDKTEXSLFLVNKLNISXLLISKRRVILLFVSKRETELLLVSELKTELLLVSELKTELLLSSKXETRLLLASELKTELLLSSEXETRLLLASKLSAELLLVNNL
Ga0272423_100029544	F104134	N/A	MSSLLSLQSEMIRFLXSVDTSAIFCKICLIGFFCIFSISLLFIILIITSHFLRSDDKLSLRRYFLVAISSLVMFAHDVIFVERRVLLCICNCLFSSXTDVFSFCTFFAMNTFXFTXCFSSESSXRRXISFNAISFHEXSLLFSFFNVDIFISKLIMLAMFSSSLCKHFNLAFLFSCDKSMSLAIIFESTLLQFMQFIIVQSSFKFTLSCL
Ga0272423_100029548	F021216	N/A	MKSRMKSNAMRREHHELEKAFKNHERNDDDHLNNTFNEYTESISSCDVIKKSNERERK