NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272423_1000165

Scaffold Ga0272423_1000165


Overview

Basic Information
Taxon OID3300033168 Open in IMG/M
Scaffold IDGa0272423_1000165 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)85979
Total Scaffold Genes105 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)53 (50.48%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-74.2Long. (o)162.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025887Metagenome199Y
F061402Metagenome131Y
F065269Metagenome127Y
F079402Metagenome115Y
F102179Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272423_1000165105F102179N/AMSVHSDSENTSTCSAMHVRSMLLKVMTLAVQEMHLDEVHFLRNKISQLKSTTSKSTDVETLTHKDHNVAEKQLNSVAETVDYKQLISRAIVKVLTIHETTYNFSSKFIIEFIKILQQEDKFAVRLKADETTSI
Ga0272423_100016587F061402N/AMTEFVDNNAISSSIEQSAFFLNKSFHSHMSFNSNSTEYEITQARIQVNKAENIFKHMK
Ga0272423_100016588F061402N/AMTEFVDNNAILLSIEQSVFFLNKSFHSHMSFDLNSTEYEITQARIQASKAKNIFKHIK
Ga0272423_100016593F025887N/AMIKSDMLISCFISMLDDSFDFKSFIVNIILSSLEKIFRSLALIDIKVTDMTFINDSLISELYECFDIQSISLFKSKSIHSYDEIFD
Ga0272423_100016594F079402N/AMQNKLKMNKNHFSIKEMKIAYVKSRVSETMIKHIALRMRNMITNSFLKAKEILSIINKMYDDLNQHYTTQ
Ga0272423_100016596F065269N/AMTRSTESESVSITHYELQNARIESLLLQNRTASEEEDTNVSLNTEEKNMNVLLFNHKMIKISISTELNA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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