Scaffold Ga0272423_1000027

Overview

Basic Information

• Taxon OID: 3300033168
• Scaffold ID: Ga0272423_1000027
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 182495
• Total Scaffold Genes: 211
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 117 (55.45%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -74.2
  • Long. (^o): 162.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005901	Metagenome	386	Y
F006206	Metagenome	378	Y
F040408	Metagenome	161	Y
F044226	Metagenome	154	Y
F048019	Metagenome	148	Y
F070712	Metagenome	122	Y
F102179	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272423_1000027190	F005901	N/A	LHSYISIDELFEHLKEIYNELNKNRKCRRKYNALKQADKFFNVFYFDFMKLSFNYLEYDDCTLMNNLQNKINNHLQNALSICSENFTSLTRLRIFLQDVNSKQRVNYQLRSERCTVIIKVTVISDKHTTFLSVTTLIINYVKSTISSIFKSVRSSIICYICKILDHLFKNCSQLNVMMN
Ga0272423_1000027193	F070712	GAG	MSDIKEKKSLNKVRKQVIFAEKRDSLNLYRKIEVTTLVDHSKSHDAILTSVKDIDLQAEICFICHKSDHTSKECSDQTLRVNALEDDEFD
Ga0272423_1000027194	F006206	GAG	LCSQIEVLLKENYFEKSFLINASLISQSNSFSLRSLIDSDFVVYMLIHDKLVDKICQKLEIQSILLAKEKLIRDYDEKLARKTITHKILLNLTIESHKKLTVSMLIADIEHHEAILSKL
Ga0272423_1000027199	F044226	N/A	MMKFSENFNIFSIISMTSFYFNKSFHSRVSFNLDTTDYETTHERLEARKADDIVT
Ga0272423_1000027201	F048019	GAG	VYALVMINIVKESIVEHQVKAMNNVMNRITNALKTQTLLVELKEYEDVFLIKSINKLLLHEDHDHAIEITAESSYELLYNLSNTELATLRQYLDNVLAKE
Ga0272423_1000027203	F102179	GAG	MSVHSVSENISMCSAVHVRSMLLRVINLAMQETHLDEVHFSKDRISQLESTTSKSTDVETSTYRDRNVTEKQLNSVAETVDCKQLVSRAIVRVLIIHETTYDFSSKFIIELIKILQQEDEFAVSLRADEIMSI
Ga0272423_1000027206	F040408	N/A	MYNYESIFNIHIENDAMKEEVSAAKERVEMLQDVQNMLTQ