Scaffold Ga0325402_1029942

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0325402_1029942

Scaffold Ga0325402_1029942

Overview

Basic Information
Taxon OID	3300033160 Open in IMG/M
Scaffold ID	Ga0325402_1029942 Open in IMG/M
Source Dataset Name	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4542
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	32.1348	Long. (^o)	-81.9657	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000201	Metagenome	1621	Y
F088134	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325402_10299422	F088134	AGG	MFMNSGRPKSAVFKFKVWPQKRNQNLFCNPAQTLLSILPIAGVLEGKMTSNLVGGRIRQFPTTFMKTTYSNSDASNDISSRQELEGYPLRPPQALFSILAMSRALVIQML
Ga0325402_10299423	F000201	N/A	MPAFNISIYLKLKLSYIIRLVIIKHALVKELLILQVQNDDIKP

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