NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325402_1001780

Scaffold Ga0325402_1001780


Overview

Basic Information
Taxon OID3300033160 Open in IMG/M
Scaffold IDGa0325402_1001780 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18196
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (54.17%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005406Metagenome401Y
F053678Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0325402_100178015F053678AGGMVELMCNRTFENKDPDEAMEYLDLLAENAQNQDTIGTCEAPGKTQPHTSNGGMHNLREDHDLQAKLNLKIVVN
Ga0325402_100178016F005406GGAMDQVKSVITLHSGKVIEKPTLEPCEKDGLISEGKEGVAPKHCKEKTNFPLALPFPHAMTKQRKVNHNSEIFKTFKQLRINIPLLDAIK

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