Scaffold Ga0326758_106096

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0326758_106096

Scaffold Ga0326758_106096

Overview

Basic Information
Taxon OID	3300033159 Open in IMG/M
Scaffold ID	Ga0326758_106096 Open in IMG/M
Source Dataset Name	Hot spring sediment microbial communities from Geyser Creek Basin, Yellowstone National Park, WY, United States - GCR.JH_S
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1500
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.6903	Long. (^o)	-110.7293	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028973	Metagenome	190	Y
F057170	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326758_1060961	F057170	N/A	VMCEVVKFLNKRYLVNGIPPDGHFDVVNGMDNLAALITAHLIRWYTKIIRRFSNVKKNDLAAGYVYLYPFNLDIKDTDVEYIYELRPTMDEEKLVYPGGAQKVLDVVRVTAKRYEWWNGTGPTDIFDGTLRDFAKQYCKA
Ga0326758_1060962	F028973	AGGTGG	VAQVTEVEAQKVIDDIIRELEEHHVNGDWDKFFDDEVLDVLLLVTPDKEDVLGFSILLSYGGPNVEFICDRGDGKIIYSYGDVEVKKDVDPDICDDIINYLDS

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