NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326758_100621

Scaffold Ga0326758_100621


Overview

Basic Information
Taxon OID3300033159 Open in IMG/M
Scaffold IDGa0326758_100621 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Geyser Creek Basin, Yellowstone National Park, WY, United States - GCR.JH_S
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7171
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Sulfolobales → Sulfolobaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.6903Long. (o)-110.7293Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008949Metagenome / Metatranscriptome325Y
F011097Metagenome / Metatranscriptome295Y
F021133Metagenome / Metatranscriptome220N
F076262Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0326758_1006213F011097AGGMIRDVPLWISGGTDPFANLPTFGGPITGNGSNGQLLRFHPNYARLLILVTGLSGTSPSIQFTVGSYYGPNNYTLPPITSPQYVQIIGSENKTIITYLNTSWQVLQQVELPYNIFFNGVNVSWSVSGTSPSISAYIHFEFEDEEEGE
Ga0326758_1006214F008949AGGAGGMSSQTVTLGTQTITPKVEDMGNTYYIEFQVKITKYLNNPVNQTIDVKFVCNKYKQVVVPSASPFSPPTVKTVQKTIQECVDEWYNQHKSVYEVA
Ga0326758_1006215F076262AGGTGGMSFNPVIKGSYTLASPQTVSVSASSSSPVSISFTPLGAGELYVYIELPSGVTASISIGGQSVSLSNGGNQFIIPANTPIGNITINNSNTSAVSVVVWALFIEVA
Ga0326758_1006217F021133N/AMTKRDDLIRQIYENGNYAIKKICEMEPDDKMANFSATDCIIGTANTHLALKIAKEKGYPQDVIEYLENQSKQEQWHCQLHIGKPPKPYDFVVAQKHREILLKHGIYVWMGVMPLLGEKIALAKAICWRRNDDPHFVNKFATVDEYYHTTYPLLLLYKYASEEELEKIVELQKEYIAEIFKLK
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