Scaffold Ga0326758_100170

Overview

Basic Information

• Taxon OID: 3300033159
• Scaffold ID: Ga0326758_100170
• Source Dataset Name: Hot spring sediment microbial communities from Geyser Creek Basin, Yellowstone National Park, WY, United States - GCR.JH_S
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19288
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (90.32%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.6903
  • Long. (^o): -110.7293

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013613	Metagenome / Metatranscriptome	269	Y
F028973	Metagenome	190	Y
F032562	Metagenome	179	N
F077496	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326758_10017016	F028973	GAGG	MAQVTEEEEKRAQETVDEIIRRLEEYHVNGNWDEFFDNDVLDVLLLTTPDKEDVLGFSILLSYGGPNVEFLCDRGDGKIIYSYGDVEVKKDVDPDICDDVINYLDS
Ga0326758_10017019	F032562	AGGAGG	VSEEKGSKETLLSEDRISVLTYADTNHNVTRYYAEVEINGRKTTSEKHASLDVFKDFERTVEELYRKAEILQTLSSPRAADALAEDMLNDIAELVLLTRALLDNIKSWRLWKSQEP
Ga0326758_10017028	F077496	GGTGG	LSAPQEEVGARLGRRKKWSGDAVIMTIYIPLDLKKELEARAAARRKSLSEYAVSLILKGLEAEKETEANIDAKAKEVP
Ga0326758_10017029	F013613	GGAGG	MPRPRKFPDGGVVISTYVPYELYEKVKELARSKGKNISEIAYELIKRGLEASDASAADPPDPPEDALHVALKGLEPLERERVLQFIKGLEDAEAKLAKLGPNVRQARAGRPTLLDVVNQQEVTKLKGTVVDLKRTYERSIKRIVRDPAALNMIGERLLRLMKELGVPP