Scaffold Ga0335073_10122499

Overview

Basic Information

• Taxon OID: 3300033134
• Scaffold ID: Ga0335073_10122499
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3331
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis → Nocardiopsis algeriensis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5059
  • Long. (^o): -80.2517

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002850	Metagenome / Metatranscriptome	526	Y
F004352	Metagenome / Metatranscriptome	442	Y
F012935	Metagenome / Metatranscriptome	276	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335073_101224992	F004352	AGG	MNGRPEQDGEQQLRLLADAWDQAAEHWRDGPARQFGDSRLAPLLQESRGYLEALRTLMDLLEAADRETAG
Ga0335073_101224993	F002850	N/A	VAAVHADIDALKGLHDALVRYRHAQREVAARGEDQVRSARSSLEERASRLRAQLELSQAEYAGCRERAAQAGPDDLPVDCSGYARAVGQVSERLEQVQLWQQRIDAAAGEFAGVAGRFAGLLDGELPRMEEQLAALISRLEAARRLQAPTS
Ga0335073_101224996	F012935	N/A	ERFFLIAGMHRWHELLAEGDYGRPSETSARLIRLADKGPDAGIHVVAWTDGYATAERALRRAGIGFFGLRAVLRVMSPAESDALLGVAAAASLDDDRALFRDTEWPVEQVEKFKPYSTTSLYAFAEERFHD