Scaffold Ga0335073_10006582

Overview

Basic Information

• Taxon OID: 3300033134
• Scaffold ID: Ga0335073_10006582
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16328
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5059
  • Long. (^o): -80.2517

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002288	Metagenome / Metatranscriptome	574	Y
F036259	Metagenome	170	Y
F059707	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335073_1000658210	F002288	GGA	MGEADGVHKRRMFRWPKEARELVREYKERISRSQEHTETGRRMLVTKLAAISGNPRDACLRFLRELGVNQKRVYREWTKPERQRLLDLITAMPVEEAAKILRRPAASVRSMLHRLGIGGKTGREWFTKFSLSRALHTRPDEIQKWIDLGWLKSRSLTTAGTKANVIHADDFCQFVKEHGRAVASRRLTYEALWFVQNYVFPPSHAELLSLRGTYKRHDAGDETNANTESQSACGSEEDGGQEG
Ga0335073_1000658211	F036259	GAG	MFGAHHRGFAWKEIAKVLHMTRAVARATFWREIKRSRSKSVKAQPPSIVIQDESDPDARKLGKPTGSR
Ga0335073_1000658212	F059707	GGAG	MMLLHDLAARVGTASDEHEYGDNQVVWLENGREVLDYVEADERFSAASFKDSLEEQGIAVNRNDLITLIDNMRSLAGLWRSSIGEHGELLFYIDAC