Scaffold Ga0335073_10000014

Overview

Basic Information

• Taxon OID: 3300033134
• Scaffold ID: Ga0335073_10000014
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 276383
• Total Scaffold Genes: 253
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 190 (75.10%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5059
  • Long. (^o): -80.2517

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001517	Metagenome / Metatranscriptome	679	Y
F012173	Metagenome / Metatranscriptome	283	Y
F020432	Metagenome / Metatranscriptome	224	Y
F088562	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335073_10000014130	F012173	AGGA	VLLIDTSHAKRDLRADVLRKRGMDVDSAADIVEARTWWRPALYDLVLINMEKGFGQRDKFCDDLRNATPPQRLAFLVGQPEYLTTLPTADQELLMQSQDEPRAMETAKVIFPAGPEDLTQRWGILEASRRISAVRSAYVARSRAIRALPPPPRDSEDRASRPSTLDDLLRKEMQ
Ga0335073_10000014137	F020432	AGGAGG	MMVPAKGPNRLNMKFTKSGTKLVIHLVRGLPPKLSRDKKTITITFLDDSRSKGAQS
Ga0335073_1000001420	F001517	GAGG	MCGKQEKVMVKKEPSLISSSDQSLVLASLEHDQLARAKKHFIPRRHLKGPELLVLWALRLYLLFMMAVVGYQVWAAVR
Ga0335073_10000014236	F088562	AGGAG	VTEKQPLNLVVAYDRNRNEYSVAAHNLTQQEAEAHVTQQTPHLRSDCSFIVLPQKKQHRSEPKDCRACRETVSRSAHLSPSPTFVRRQEP