Scaffold Ga0335084_10805548

Overview

Basic Information

• Taxon OID: 3300033004
• Scaffold ID: Ga0335084_10805548
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 954
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002261	Metagenome / Metatranscriptome	577	Y
F003186	Metagenome / Metatranscriptome	502	N
F010139	Metagenome / Metatranscriptome	308	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335084_108055481	F010139	AGGAG	MDSVFMRSPEGEVKEVEATAEKLTPLMVAGWHQVPAPIVANQKPVVAAEEEKLHGEH
Ga0335084_108055482	F003186	N/A	VINPKTILGEWVTALQSCPDLVAAIGGDANDIRAFMEGLATDNNLRLAVLQMPPGSILVAWNGTTPRRLAGGALHFAHRFSLYLRAPEQDSTATYADLFWLLVSAKPTGAPSWESLLHLQIDPDCYPMDMDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGE
Ga0335084_108055483	F002261	N/A	FGELVVYQPVRAAAAQGNPFTVTAIRHLRPRDESGATASFEEISVDPSDFTNPPAKGDWVTAWGTQFVVTTVRQPDAYGMLNLALLQRS