Scaffold Ga0335084_10120386

Overview

Basic Information

• Taxon OID: 3300033004
• Scaffold ID: Ga0335084_10120386
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2730
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013593	Metagenome / Metatranscriptome	270	Y
F030603	Metagenome	185	Y
F041659	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335084_101203862	F013593	GGA	MDINYNLETLTGKHGGLLEVVESIISDGRLILILTDEDVLQRRDAPLKGVFYRLILPLAPAMLNVKGEAFGLIRESLKFTEDGASLEKLARGIER
Ga0335084_101203863	F041659	GAGG	MATEKQFLDEQGMTNLARKSIEVLRQQGASPTELRRLETLLKEGSVGEAFIMSSLLRTILGEISPEASQKKLLLVYRGLEDICQSLVQLSRNLFDIEAWQHYRDAGYETFESYCEGALGIPATKIQGLMLVKDKCLPRPKKAGPTELFFWFYETVELLSTTKAS
Ga0335084_101203864	F030603	AGG	MNPDRDHKVVRHNRPSVISLALVRYNFSTPEIRVLMHHVLGHAVSGRTIKRLARSAGHRLNRGRPPTTARVHKSDAGDLIEATGNGLDVFSGNTLQFFHHIQVQFGLAPRQYLKWAAKFVRRGKYMMRRCLLCNRYFPSADSGERHCPNCRGKRRSLVIHDTGFASEHFG