Scaffold Ga0346503_1024228

Overview

Basic Information

• Taxon OID: 3300033002
• Scaffold ID: Ga0346503_1024228
• Source Dataset Name: Soil microbial community from agricultural field in Dibrughar, Assam, India - D1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Eurofins Genomics India Pvt Ltd.
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 591
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Contaminated → Soil → Crude Oil Contaminated Agricultural Soil Mecrobial Communities From Various Regions In India

Source Dataset Sampling Location

• Location Name: Dibrughar, Assam, India
• Coordinates
  • Lat. (^o): 26.2006043
  • Long. (^o): 92.9375739

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002388	Metagenome / Metatranscriptome	565	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0346503_10242281	F002388	N/A	DDQVARAAIVKVASYYARLAQHRTPAEMEALIWQHDSTDGAGHGPSCAAFASMTLQLGAQLAGRESWVTGGSTYPWPLHDWVDARVGPNPGSLSITSVLQDAQAHSRWHALGDGYRPLPGDWVLFGNHVEVVTGYAGGVLSTIGGDSLPNFSVNRHEYSGPLGPEGVQGFVSNGDLPAATPHGTPGTGPAPGTRPEP