NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335076_10034729

Scaffold Ga0335076_10034729


Overview

Basic Information
Taxon OID3300032955 Open in IMG/M
Scaffold IDGa0335076_10034729 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5055
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025048Metagenome203Y
F030458Metagenome185Y
F031889Metagenome / Metatranscriptome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0335076_100347293F025048GAGGMLNPAPITDAIVNVLQSIPDLAAAMTVLDANQNPVCRISAHHYRLGVEHRLAEAIYKMPAPSMLLAWDGTQGGNFDGQTMWKHRFSLYFRMGNAVGQTEPMGYEELWWTVCNKPPTGSPVCIRYMNLYSGLDIMDTPSVAHALDEDLQDRFVGTFVIPEIGDN
Ga0335076_100347296F031889AGGAGMYGSIPDQGITIKVPNPPKAARVRLPTSDEMLGRLAAQKSIRRTIGRRKSQTQFIPNPQADLTLFTQIRLDKDGVEFDEFEASNAVSKLTFCEVTDCERVGDEYRITLKTPFGDTTHTMRIPTQRDVTLYRRTVISATDLPHGQEEIRYRTEPAIDLYDSVVAKAEGYIDGLKMTDVPPHHKSAVVVELVQAIDDLDPQIDPNS
Ga0335076_100347298F030458N/AMPFQAKITRARWVLGPFTSEDMLTIGNVVVDSIKDRLHKGLNVRDETAKPLKPGHNGKRGYPDYKAARGLQPFRDWFWTGRTLRSLKVKQASENRSVIGFIDPKADLIAHVNNIRERAFGISPKDRLALNAVVRTVLKTARVIRVARAA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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