NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335083_10204525

Scaffold Ga0335083_10204525


Overview

Basic Information
Taxon OID3300032954 Open in IMG/M
Scaffold IDGa0335083_10204525 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1803
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002850Metagenome / Metatranscriptome526Y
F004352Metagenome / Metatranscriptome442Y
F008441Metagenome / Metatranscriptome333Y

Sequences

Protein IDFamilyRBSSequence
Ga0335083_102045251F008441N/AQAQLLDAYAEAGLLWAKVVGSALALAGALIERGDWDDVRRLAGFLAGAGEEDAAAELRIELGKTIWESHREQLRVISNKMPPEAIGKAIDALRAVLREVPEEYPDRNREVNCFLAPLAAAIHALMKEQEADIPYHSRVEHIASGGVAKYPDIVKMSLDELAAEFEGICRWPGRESR
Ga0335083_102045253F002850GGAGVTGIDADIDALRGLHQALVRYRHAQREVAARGEDEIRLARASLEAKASHWRTQLELCRAEFGACQDRAAQAAEDGTVDCSGYARAVEQSGEQLEHIRRWQQRIDAEASEFSGTAGRFRDLLEAGLPRVEGHLLALIASLEAARRVQAPAS
Ga0335083_102045254F004352N/AMTARPDQDGDQHLRLLGDAWDQAAEHWRDGPARQFGEGQLIPLLQESRGYLEALRKLMDTLEAADRDTESPPGSGRE
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