Scaffold Ga0335083_10030129

Overview

Basic Information

• Taxon OID: 3300032954
• Scaffold ID: Ga0335083_10030129
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6059
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003354	Metagenome / Metatranscriptome	492	Y
F006606	Metagenome / Metatranscriptome	369	Y
F009711	Metagenome / Metatranscriptome	314	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335083_100301295	F003354	GGA	MGASPLQRGRETLRTFGIRNKMTLKSALQDVKETTLAAVSGLLGKLAYLASLRRAQGRYVHWGMESVHGADSSERALKTAHAEIVAGVLRMPLASLLDDLQKSSQSSGVVARTYVEELRKNFDDLLPGERKDSPEASHLNSVLVALSSLEKNRGRATRSTS
Ga0335083_100301296	F006606	AGGAG	VKRVLLVVGAAVIFLSTFVVPTVVRADGGVGTTNCDGKMCKP
Ga0335083_100301298	F009711	GAGG	MTLAIILVIAAVLSLALILRIALSRNLQVSRASRAAGRIEPIDVEAFRNLTDPAEDEYLRRRLPASEFRMVRRERLLAMAVYVRTAGRNAAVLVRMGQSAMTASDARAAEAARQLVDDALLLRRNATLALFRIYVALAWPNSGFAAAPVLRGYERLSSRAMLLGRLQNPSTPVRISATW