Scaffold Ga0335083_10025970

Overview

Basic Information

• Taxon OID: 3300032954
• Scaffold ID: Ga0335083_10025970
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6615
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008269	Metagenome / Metatranscriptome	336	Y
F047844	Metagenome / Metatranscriptome	149	Y
F087522	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335083_100259701	F047844	N/A	LSFSDRTAVAFALAMWIGCLGTHAWAQDSSANLTSAGPDNSLGDLARQTRAEHATAGDRQSSKAQELVNEMQQEQEAPDSAPVGFKNYDAGDYRLYVPFPFSLEGRENGGAVLLGSRLGITNTEVMAGAPIPIPPNSSDNDLINLARQFASLHGASAYCSALKEGAHRAFRCSWQTSPRLLGHEVWGSMEFVVAADRLIPVMCVSPNDVHQACVVYDTYGHNTCSDREHQLYGWDHRKAQAAADANYRDERSTAQMCEQVIYPSIQPKEDIVVHPATISESKAPKIVAVATMQEPAEGDSGSQGPSLAELARRTRQAAHIKPEASLDNSESAVPAGFESFVLQYCQNPQHCSEATVVIPQKTEVVSRTNGQHIFKTTLDGESVFLYAGPADVNAPYRSLTDPDYIRMRDLANANGWSREKADGVSTQELTIEDRYALMTRFRYERDQKRWWVGERVLVQNRSGEFLVGCTAPEEHFADAEVLCTTMVNSLRLP
Ga0335083_100259703	F087522	GAGG	VTSVRCALLSPGEIQKRLAALQSAAVMFRVGPHAEAGMEHPGDGYFKYWDGSDLLRKTTQDLLQTEFSQHPVAAGDSWKPRGQFAYDRDTALKDLDLSGADLRFRNMVRVDGKSCAWVTSQYVFSPIDLPAAGTASGGVMVPDAGNNAVAAVIHISLLLDPASHHVAWLHRSQTIDNKLTLASPYDSVDPTDDPAEPDDPGDSENPMPDLSSMRSDHPGRYPFMTFHFQEEARARLLPSQRSVEWLAALKRFEETPEPESGAIPVPATKTLLSNAMIQAAKPLSVNKKTRVVIDSDSLMATPAGFTRYEKGLCRDAWFCATVSVALPGDVQISEDTPLRTVYLARQEGLLLSVAVGPALDRQWVGLTEDEELRKQANYYLANYVWLAAKPGIGTNSSSATLDGYSGLITDFSATQRDMADIHGVLGLMLTPWGKVVPVSCSADHGSSADLQAMCEKVIASVSLRRR
Ga0335083_100259705	F008269	N/A	VDEAGTRTSRTTCPSAKARPHSVAPSARLARALSIVFLTCFVLFSTHVAHAADPATVTFSLDFPNSDPEHYSISVQSDGHAKYECTGRISEDSEDRQTYQTDFIISDATRVRIFDLAARAHYFSGKVDSGKKKLAFTGAKKLAYRDGQRETTAAYNFSSQPAVEQLTALFQSIGATLEFGRRLVHFHQYQKLGLDDELKRMESQARSGELAELQAVKPILQAIYDDSSVMNVVRARAQRIMEIGNGLSAAR