Scaffold Ga0335083_10004992

Overview

Basic Information

• Taxon OID: 3300032954
• Scaffold ID: Ga0335083_10004992
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16814
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (47.37%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002981	Metagenome / Metatranscriptome	516	Y
F003832	Metagenome / Metatranscriptome	466	Y
F005268	Metagenome / Metatranscriptome	406	Y
F014888	Metagenome / Metatranscriptome	259	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335083_1000499210	F005268	GAGG	MSRSDEETEAQQVWRALSEAGLVEIRLDEFAERIREVKRIVVGRLHELLDIDTGVKERESAASSLGTLRGLELKVQENTPKPPDPSEM
Ga0335083_100049925	F002981	GGA	VPAGPTINIGEEYGTAKKNLPPAKIVLLAVAAVIVVVIFASFLKRAKPQATGSLDNVAAVEIPGQNSTMVALTFTLHNTSDKILYVHNIQASVKAPDGDATADAVSAVDFERYFQAFPSLKVGAQPALPPETKIQPGETVLSTVIVVFPKTLEAFNHRQSVSVIVWPYDQQLPVTMTK
Ga0335083_100049927	F014888	AGGAG	MNKVLEVLLTVVALAGLYSAIPASSAGPGNAVIQTEQAVVLADGSDPMPLCRGKHCK
Ga0335083_100049929	F003832	N/A	MQSTAKLQDNEANWPPEEGEVISFKSSTGPETAILKEVRWGLVWRDFILEDGRVIPEHRISGSPQPQVWRKIDEVSDDEREECEERLLAMAEARMDPRTRDQPFWAELNQYLAYTYLRFKRTGHDVKDTGR