Scaffold Ga0335083_10000228

Overview

Basic Information

• Taxon OID: 3300032954
• Scaffold ID: Ga0335083_10000228
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 92694
• Total Scaffold Genes: 92
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 73 (79.35%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F000536	Metagenome / Metatranscriptome	1044	Y
F000624	Metagenome / Metatranscriptome	977	Y
F000696	Metagenome / Metatranscriptome	931	Y
F000703	Metagenome / Metatranscriptome	928	Y
F000739	Metagenome / Metatranscriptome	913	Y
F000781	Metagenome / Metatranscriptome	895	Y
F022762	Metagenome / Metatranscriptome	213	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335083_1000022810	F000624	GAG	MPIQWYGFLTAIAAGGVQFVLFLRWLHRRMRDDEIVRTFVRDIATTHLPHIYSALRDIAEQQGIELQDPPLVRFVDLHGHRRRD
Ga0335083_1000022814	F000703	GAG	MSVREYRESDLAALRTIHAAQGFDYPLPDLRNSLFVTKLIFSKEAEEKGAAEHESQQAQIVGAALLRLTAEAYLLLDPKAGTPRHRWQWLLNLHAAAERDAWQRGLEDVHAWLPPPIARTFGKRIESLGWHRDDTWTPYCKRLTAKV
Ga0335083_1000022816	F000781	GAG	MLTVAQLAPIKDHDPYLYETLTKIVASLNATSQAAGVDPATPAPAPTAVASINVQASNGWFDISVTDPSNSRPGLFYFAESDTTPAFSSPRVYFMGAARNLYLQLGNQTLYWRAYSQYVGSLPSAPVTFGSPPTAVIGGGVSGPAPLPSSGSGVLPNGQVRGGNGFGINPGSRIMRQSVL
Ga0335083_1000022822	F000696	AGGA	MPVVGSSAYNSAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDALLVVTAVTQTDASLQVSITDATAPPNQLPTDFLVPIKIWERPNGSMDDFLEMVDLTQHGGLPSRVQDVTLSVWEWRADGIYFIGATQDTQIRLRYAKAYPDFTDATSPVLVRNSQEAIAYATAALAGWARGSPLAEKWDEAASDAIEDLVSAAIRREQQSLRRRRPFSSRSGYTPF
Ga0335083_1000022823	F000739	GGTGG	MRRLELKQFELWLKGIVAAAVSGGAGGVLTGFAAVGIDPQHFNLRTGMGATLRIAAAAALINAVIGVAAYLQKSPLPEERGFARHDRDGN
Ga0335083_1000022837	F000188	GGAGG	MSVKPELAFDVCWEVYRGAREVLETKRGISALNWKDTGKFLWRPDFRPRLNEWVADFALAGQKALEAPDCASRMVLFRLYYLGLAPYENARHFVGLSERSWVNWTEEVRRRCGKELLLRGMFPPRKYFSNEP
Ga0335083_1000022843	F000536	GGA	MVELTPRQMQTMEKLFEAGFRPLAIPPNENVLCVRRGDCVAVLSPVPDGGLKLFASPSYLIEGNFSVRLKRGANEVFVWKKSELAATPERLQELELFRQELSEVLASWQLQ
Ga0335083_1000022866	F022762	AGGA	MGKTKESYIEKPVPAEDEEDEATLAAIDEGIADAKAGRTVPAEQVRKLLRKWTSGCLLGKIAKLSG