NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335072_10566193

Scaffold Ga0335072_10566193


Overview

Basic Information
Taxon OID3300032898 Open in IMG/M
Scaffold IDGa0335072_10566193 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1154
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052224Metagenome143N
F064606Metagenome128N

Sequences

Protein IDFamilyRBSSequence
Ga0335072_105661932F064606AGGAVITMCSLGVKHLLLLGMKPQLAAVMFLAAGSISQALGQAGGIINAFAIIGSFAGLVFAGWAAKMGRTEMIKYGLLGSALCGLAWAIVNAMFQAGGQQVSVQLQSPN
Ga0335072_105661933F052224GAGGMERIIHANDNAREAKATIWIFEGSSLYVLIVAIALALAAFRYCYDGLGLGAWGSAAGGAAPLVIATVYVVALKLGKPKSYDIDCFRSLGVRLTRGVSRSGLLLVRLELHGLSNKGQHPYS
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