NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335072_10292493

Scaffold Ga0335072_10292493


Overview

Basic Information
Taxon OID3300032898 Open in IMG/M
Scaffold IDGa0335072_10292493 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1833
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F102308Metagenome / Metatranscriptome101N
F105715Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0335072_102924932F102308AGGAGMACIDSTKRKTAGRKRQSTRGILARFEDEREILSRLPRVITGNRGAAEQSVGETRGLVTNGAHPHLFREQLLQWLKWGTIKVAITNSLYEIACCESKYVNQNCTHSEHVLNGNDLKLGEFRSFLWQIDPETVIAELEPLARAVAVLRTTARASILDCVSWFQLSLDTVLAANWRAMTWFVEKRTGLSHKALTPEPKEENP
Ga0335072_102924933F105715AGGAMLRAEFNQRNNGLVLKLEGRLVSAWAVQVKSLVSRHFVSNGLLVDMSEVTYVDSVGEQLLLWLRDLHAEFAAETCHARDTCQGLHLPLKGDADRPVPSATEVHSPLTVVPLTRPGDL
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