NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335072_10001362

Scaffold Ga0335072_10001362


Overview

Basic Information
Taxon OID3300032898 Open in IMG/M
Scaffold IDGa0335072_10001362 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39897
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (85.11%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033311Metagenome177Y
F044616Metagenome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0335072_1000136225F044616AGGAMQSTSPTETIECPLCSGVGKLKRSEILDRLGVKDFARVAQLSAEEAFRLFQNRHDREHQSAWSRFETELAKRTAEIRESLSGELRLALSEKDSLTRRVEDSLREIGQLREKNQLLEGEMSKVARVGKREEMDFADEARTWAGICISEKLSRNGDFILSYRAPNGDPTEPKILIDNKDKSVIAESDIDKIVRDARERSIGVAALVVHDESQLRLIDRQSRWGREDSVWVLRTTRQWLPRDLDVLRPIFERMRVQGFDLLEGNAVLAEELRRTFPEIDRIEKELGKAAKAIQSVSGLVVRYRERLRDLCETAASTRIAPKPEHDGSLTAAGRQ
Ga0335072_1000136228F033311AGGAGGVNIHELARYYLSQKQTVRAAGLMIKLVETEPTPENLTLLADIYLQQGLFDHAAELYLRVVKMGLKRNH
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