Scaffold Ga0335072_10000746

Overview

Basic Information

• Taxon OID: 3300032898
• Scaffold ID: Ga0335072_10000746
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58510
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (82.35%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5059
  • Long. (^o): -80.2517

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002516	Metagenome / Metatranscriptome	552	Y
F028967	Metagenome / Metatranscriptome	190	Y
F032349	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335072_1000074617	F032349	AGG	MGGFDYGAFLLLGVDSLIACIVTGPMFIRQRTGGHSELRSPDERKHAGQWKWWAIGAVSALALPYGLSYGLGDGIGFLIGTSLHFSISDSLSSWLETTLLVALGLYWIGIYFVASRMQASEQLQKWSWRGIWVLPVALSIDNLTFGAVTGVPANASVWASAGLQALASAGLGLVGLAAGIGLAILIPALRTRMHRTFGIVGVGVIATAGLLLVTGW
Ga0335072_1000074640	F002516	GGA	MARSVAGYAIPGIIVFLFWVVVVILAIILLGAIAHWAGGGALDLHIGHFVLNVGFT
Ga0335072_1000074649	F028967	GAG	MSAGRRRLGIESATFGLGYTAVLIWSGSALVASFTAGEANPYWPAIPHLRTDTLGVISFAVAIVTLSVSRYLQLSRRGKGVEVPPARRAPRVLAVQAMAEVAVVLGTALVAYLSLNAFTHPETLRLQLTHLWPWPSEGTVRVIGLAFCLVGATVSRYLRATASSTRQPAPVPDKATIAA