Scaffold Ga0335071_10103581

Overview

Basic Information

• Taxon OID: 3300032897
• Scaffold ID: Ga0335071_10103581
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2791
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5008
  • Long. (^o): -80.2398

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037652	Metagenome / Metatranscriptome	167	N
F080330	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335071_101035812	F037652	GGA	MERIPYTNFWSEAPEGQRRAWRPTDEVRRRLMRLWTIQALLLTAIVAVGALLAKESKRMPPIFAELPNGMVFETAIGRLQMDRLARTELVNDVLPLLYYQEGSFNYLGAIRQNVKPQLLGRFQAEMQNASKQTNSTVCLNVVETFEVLNAPAKGFDAVTKGVLSKRSSKDSASAPIYIRTRWLLSAGRYLLSRVEEIRPGDYYELFLAEKQRLKKLSKQELEREMGVRKNQEISLPKRNNLY
Ga0335071_101035813	F080330	AGG	VKRFVHFVLLLLAAGGALAQDPFQGNDTGQAGLADNVRLSTRIVENVYLMPAQITKLIFPKPVEEVSVNTQVINIGRNPPDSKEYYLLLSPKVAKADVDMHVAMDGKTYTFRLLVGREKVNYRKTYTAEGGGSSGRNLRKVPPLAPTEINTTRLIHIINQCMRDPNYASVVAKDIGSSPQGATYLWDGVEVVLQSAWHYYPQDVVILQVEVHNPTSRALYLSATQIEPYIANTAFHYLLTQQGAKVLLPGQTDIKYIFLQGYGIDIEGARFELRLPATGKQLNAQPRQDQ