NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335071_10085321

Scaffold Ga0335071_10085321


Overview

Basic Information
Taxon OID3300032897 Open in IMG/M
Scaffold IDGa0335071_10085321 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3095
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045207Metagenome / Metatranscriptome153Y
F066913Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0335071_100853212F066913GGAGGMKRRYLAALAILVLLCGPSVSSADPGSWAHLAAIVAWLQQIDATLRQVNDDVAGIKTVIDDMYPQDVLRQIEIVLEPVNSITQELQKLACNWRFTPRVEQLRLALFQGGTFCRREWNSLYGAPTLTVDWDLEHYYDYSSVRRMNLIKTRNDKGPQRVAEAEWLANEAQRGRDPLDTSDPYSPGYSQRLSAMAAAELGNVMVETGDTQTAMLELDQEALNDKRHKRLLANEAAALVYLDMARRGQDPVVIPTDGIQP
Ga0335071_100853214F045207GGAGVSRKLALAAVLVLAALSSGCTADVLGRMKGFDVMQIVQSQPVTEAVLKARDVGRLLAGIEALILAFVCWYRIHVGVPWLAITKDWFLGIFVCAYVLTTAGTPAGLERWVWDVGVYLGQQFNPDRGFLMENFDRAVGQQGELILGLQKIIPTLSDDERRLVEAVGWQFSSPFVAGFVWLNAVAIYIMKMIMQVSYAWLISFYWMLTPMVAPMVILPQTRTVFLGWLRSYISVALWPLFFAFAERLALAIPWSAWLGAADGTTDVWGLTVNVLQGEMMLFIFNITFFFVFLSIPIASYMIVSGASRPFRTL
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Institute for Fundamental Biomedical Research
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