NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335071_10031960

Scaffold Ga0335071_10031960


Overview

Basic Information
Taxon OID3300032897 Open in IMG/M
Scaffold IDGa0335071_10031960 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5233
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046997Metagenome150N
F055381Metagenome138N
F058854Metagenome134N

Sequences

Protein IDFamilyRBSSequence
Ga0335071_100319604F055381N/AMKFLLLFVLPALAAGASIRDVCLPPWYDQAAFQRVEIELKDLPGNYVQLDHPCTVFLTNQVVLVSNGTARAALLIDLKKTPTTFPILVMAPDANGQMTAQQKLICHLSLVPSPVQIVVRGDNSFSLTNLTEEPFVIEHTEDLTITSRDEQHITGTLHGSGRLKLRGRAELLLNPRPRL
Ga0335071_100319605F058854GGAMWLCVLCLFISAWRSEAEIIDDHNARWQGTAWQANRLDLAGLTYQSALFPLITQGPGTFSLPTGAFVLRLHVLPLNSEVSEPLLALWGRVADPQEKPLARLFLRKGRLVWVCPIDPKGDSLFDAPKDVELENKALTPGLWATIDVLVNPLPYQQTFGWNLEINHPQDPAKQSGTPLHLARQLTAADWSLQKIEVPRLHAAWLGQMELLPANTPPAQLRPNIVRQ
Ga0335071_100319606F046997GGAVFTTFAYRTWSLIGCSLTLSVAAGPVTVEEVRAERESIPRALARDKVEAIEIFRASHQPLLWQRAVCGLSCIENKLQAVQTNAAAEPSAPQVLLGDRKLTPHADVSQRTYTARQPANGMRVYVDRTRRRAPETYVAPEILEAGVNILIPKGTNEVPACLAGQELEDYLHLRCDQKLRTGDYWKELHAHRLDDEQLARLRYYDYLDTHVALRSVPVYQCMEIRSRNH
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