Scaffold Ga0335071_10003001

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335071_10003001

Scaffold Ga0335071_10003001

Overview

Basic Information
Taxon OID	3300032897 Open in IMG/M
Scaffold ID	Ga0335071_10003001 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	17952
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (80.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5008	Long. (^o)	-80.2398	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034259	Metagenome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335071_1000300122	F034259	N/A	VTKLVVGSMKKMSKQIDFAKQRREQARLLTSAVHEIATSLQPVAHQQGIEFRQVLEEAAARKSEEHERLTERLQESVVPLFIVNPSGNPERIGSCVLVRLDSDFFGFTAAHVLRDANTAPLFAPSEPRGGKLLPVAPRAVHLKSSLDGNDLDVGALALPARQLGAFRGHVFLSGPEIDREDRPDDSGLQSFYMVLGYSASRTQVNISKTKRQIHQQSFRCSTQPVEAAEYIQERVRQPDHILLDFDHKEMRVEGRRVTAPKLQGVSGGGIFQIGRRPDRAILVAIATQNRRRSRLIVGTRIKHFLSLIREAKTTHRDGSD

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