NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335071_10002680

Scaffold Ga0335071_10002680


Overview

Basic Information
Taxon OID3300032897 Open in IMG/M
Scaffold IDGa0335071_10002680 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18927
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031240Metagenome / Metatranscriptome183Y
F052920Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0335071_100026802F052920GAGGVKYEANSHVTPCTAPFPERTDMHWETTNLQVWNAREGAAEQHELVYEVSWVDELGTWRRFLTFRRKVN
Ga0335071_100026803F031240AGGAGGMQSQSTEFHPRATVRLFLAVVNQAIADVLENGKEAKEAERWLLSKDFDTLDRLFACPAKPVESRLQGATPQHRIWASHGTPCDSF

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