Scaffold Ga0335075_10001393

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335075_10001393

Scaffold Ga0335075_10001393

Overview

Basic Information
Taxon OID	3300032896 Open in IMG/M
Scaffold ID	Ga0335075_10001393 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	40088
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (86.84%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5059	Long. (^o)	-80.2517	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008041	Metagenome / Metatranscriptome	340	Y
F026064	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335075_1000139316	F008041	GGA	MLPSSSMPTSSLAGTCGGCTVPGRHSIWPMQDRLFQFEEFGTAGQATATIIFICPYSAPIQKVRFSIRRFLRKGYHVLAYETTDAVFTEADPAILPALIAQVREDIKSRIAKLTAEGVTEFGFFGSSLGSFILYNCVGREIPELRWGVFNTGGNIAQGLWAMATLRELHIVRGWSLPRLEEAWAELQWPDFGRLDGCRFVFVSSRRDDVAPLRNISRYLGPMLQAGADVSIREVPAISHRTTVIAGLWKGPQLVRMVRAPRPS
Ga0335075_1000139336	F026064	GGAGG	MITIYTAQGLAGGRHQELFKGAERRRLIAALPTGPGLLQRFALRVAGCGRRPAVVREPATVAPRAYGPLAI

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