Scaffold Ga0335075_10000003

Overview

Basic Information

• Taxon OID: 3300032896
• Scaffold ID: Ga0335075_10000003
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 752227
• Total Scaffold Genes: 729
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 598 (82.03%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5059
  • Long. (^o): -80.2517

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002437	Metagenome / Metatranscriptome	559	Y
F004096	Metagenome / Metatranscriptome	453	Y
F027589	Metagenome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335075_1000000323	F004096	AGGAG	MKNFNFLFAAWMVVWAVFFVYEFSIASRIGRLREEIDRLKQQLRER
Ga0335075_10000003627	F002437	GGAGG	MKLSEIGMQRLLRISSALIILGLALEIASLLWFHPLAFVLFAFVATGLIGPGVVVYLASLVFAVEPTERS
Ga0335075_1000000386	F027589	GGAG	MYGSRDCAVSRALLVSGMAAAALSLVLAARRVEPGPARVIEIVADHDSRFRIDGQESPTITARAGEPLVLRITARKAKNRNRDGSIHGFALLHAKDRSKVPGWDFLLKPGLQDFTVTAPTEPGDYVVVCTVICSDDHEGMNMKFVVTP