NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335074_10048134

Scaffold Ga0335074_10048134


Overview

Basic Information
Taxon OID3300032895 Open in IMG/M
Scaffold IDGa0335074_10048134 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5883
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000208Metagenome / Metatranscriptome1593Y
F007596Metagenome348Y
F024602Metagenome / Metatranscriptome205Y
F030613Metagenome185Y
F036872Metagenome / Metatranscriptome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0335074_100481343F030613GGCGGMSADKRVSRVADAEQQQLETYLYWQSLPIGDRLSAVWDVSEAAYSFAAAFKGVRIDDAQGSERLATRIQRARR
Ga0335074_100481344F036872AGGAGMKNAHLRFGWLMYVKSTEKTTTSIKLHLDRFIGELLPDPPRQAKAHLISVVGGDTQISAISAAISMGDRFMIEGPEVPPTRVCLERNAQYFKGSLQLRERKKPLRHLIGMSEEFASGSVSANCGKILLAGSDHQFVWASIAQICGLPGVPDWAAWFSDELKTHHALIDVLGIGCDPVIVKGTKEDFLDCLGWAVESESVRFPLETGPIRWPALSLKDIFNGVV
Ga0335074_100481347F007596GAGGMSLKIRFRFDGRCTRHPRYDPKRDGHPPDRKCEGCESLYVIHLYTKIAKRRAEDANLIVVRASSDREERQVHDLEPSSETGDES
Ga0335074_100481348F000208GAGGMRIRVTTRADLFEKRKKEHIDRGYRIEHERPNPVNGFCSFIAVRELSISDTLSDLVAEALNGNRVPSGD
Ga0335074_100481349F024602N/ARMYRGLLKSTARVWNPKDIQDPAIQVKVLAHLQAAERGLRRAMAARERAGLAAFAAILGPLKLTSLDQVDNLKTLQAIVVGLEATQSTK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.