NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335074_10011136

Scaffold Ga0335074_10011136


Overview

Basic Information
Taxon OID3300032895 Open in IMG/M
Scaffold IDGa0335074_10011136 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12575
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (70.59%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022915Metagenome212Y
F026064Metagenome / Metatranscriptome199Y
F071730Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0335074_1001113614F071730AGGMTSPAPGAVAHLASFLQQHPWWSAFWDKEYGVWRVAEDDPYSALYVESADAAEVLSYMAAHS
Ga0335074_100111365F026064AGGAGGMVPVYVARGLADGRHQELLAEAERRRLIAAVPAGPGAVQRFAPRVAGRGRRPAVARRPAALAPRAYGPLAI
Ga0335074_100111369F022915GGAMSIVNTPTVRDELAAILEETLRLQQRLMDDVRDDAVPVADLVAQVSVLERLDDRRDRLIGQLRRTASAGMRPARTSPPVREILLETLAHFRWPQNAGFLEEYLLARHQLQLDSRAFAPLRRDERNAWDRAPGARDAYLAPALKPDGSANPRWLTRSDWDLERRIVATPRTERLFDLYKIYVLAGRPGSAEASYLGPRSPVDALLEKYAHDILDTEPPPSSASDEKFRAWRADVRERAGTAIGEIRREDEPDRKQIARQLAGLPGRDRIWGQDAGIKA

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