Scaffold Ga0335074_10007913

Overview

Basic Information

• Taxon OID: 3300032895
• Scaffold ID: Ga0335074_10007913
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14750
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5059
  • Long. (^o): -80.2517

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005419	Metagenome / Metatranscriptome	401	Y
F026317	Metagenome / Metatranscriptome	198	Y
F070346	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335074_1000791310	F026317	GGTGG	MGFFVQFLELLAVFLPDPSTLGLFTLALFNLWCTTKTLHVAGTLNTETALGVSLALGYLVTITINIFEILQAPARSTITTSSAPEPRVEQAGRESLSCTRKAQFAGREGAVIES
Ga0335074_100079132	F070346	GGAGG	MKRLFPPTSLRWQRLLHFVSWGALIVLIFASAPFLFDLIGRGIGWMIGLVPHPDELWKECPWCF
Ga0335074_100079137	F005419	AGGGGG	MVAAGATEAVGQGKDAEVDRSPRGTRKVRAGLTGGVEVQRFFLAKTGGSNGVPEFSKEVPAEPEAMVESLKTGLSYFIVSEWRGVADFSGKKPQLGREPARSGPKPG