Scaffold Ga0335074_10007271

Overview

Basic Information

• Taxon OID: 3300032895
• Scaffold ID: Ga0335074_10007271
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15340
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5059
  • Long. (^o): -80.2517

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034435	Metagenome	174	Y
F065349	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335074_100072716	F065349	N/A	MQSKTQRLIELMRAGDWPRALSLANTFRRLGPHRDTIRLAHECRVHPRFYRSVGRDPEATIAAGIAALQELYPPNRSRP
Ga0335074_100072719	F034435	N/A	MPARTAKISKKTAAVRDAYAARTGMDKRSAKILVAAHIVKPETYQDEDGNVIRVWKSSEMSSYSNADIASTLRNRVAVEPNEMLGTVPPSAIKYCVTKGWLVPNASKTLYSVTLRGAIDLNLPLRFKGGPSHGRKIPFAATPSAPTKG