Scaffold Ga0335074_10003207

Overview

Basic Information

• Taxon OID: 3300032895
• Scaffold ID: Ga0335074_10003207
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22260
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (77.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5059
  • Long. (^o): -80.2517

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005763	Metagenome / Metatranscriptome	391	Y
F013518	Metagenome / Metatranscriptome	270	N
F037111	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335074_1000320710	F005763	N/A	MSQPIEDDWVLDEAEALLDMDGRRERLEQVVADLHSGTVQPVDHATARGRIETRIQDRRT
Ga0335074_1000320711	F013518	N/A	VGRQPRGLLWEPRALDALEQLAEYLPAAARDALEAMERMASTGFNYGRLTRKGILWYLPTPKLGLFYLDDGRTLIVVDVVDARRLRELP
Ga0335074_1000320713	F037111	AGGCGG	VIVVKRRCKSGVSSNGARTISSTVPDVTEPDATGPCPAAIHPHDAPPRAGQVVRRVLLRRNIVIDGETAQAVAAAVQAALQADTQSLPRRRGPRAPAAGCEPLF