 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032895 Open in IMG/M |
| Scaffold ID | Ga0335074_10002288 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 26078 |
| Total Scaffold Genes | 35 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 30 (85.71%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Florida | |||||||
| Coordinates | Lat. (o) | 26.5059 | Long. (o) | -80.2517 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000208 | Metagenome / Metatranscriptome | 1593 | Y |
| F001742 | Metagenome / Metatranscriptome | 643 | Y |
| F002288 | Metagenome / Metatranscriptome | 574 | Y |
| F002560 | Metagenome / Metatranscriptome | 548 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335074_1000228810 | F002560 | AGGAGG | MVENNPPAPLDLARPPVIPLPTALYVSGELIFELYDGGQPRRRFSIRWDRFVPTKKNEPDAVSPQTVLRTRQD |
| Ga0335074_1000228811 | F000208 | GAGG | MRIRVTTRADLFEERKQQHIERGYRIEEERPIPVNGFCSFIAVSEIADSDGIGELVTQALNGMPR |
| Ga0335074_1000228830 | F002288 | GAG | VRNYQENIGRGLEPNKSDKEALLATLAELSGNPRDACLRLLRHLGVAYKRTYREWTKPEQQRLLDLITSIPVEEAANILHRSPGSVRSMLHRLGMGGRTGREWFTKFSLSRALHTRPDEIQKWIDAGWLRSRTLTTAGAHARIIYADDFCEFVKQHGRDVVGRRLTYDALWFVRNYVFPPSHAELLSVRGTYKKHDAGDETGANTDSPSACGSEEGA |
| Ga0335074_100022886 | F001742 | AGAAGG | MPDTTVGNRRRDKQQIPRIASKEAEQIFARCEHLLGNPDALCRNLSQAGFSRFLAQFDEKILELAVQPDSWGERTRARLISEVFTGFRGSPAEDASVEEITEISNIVIPCFLLELGRRRRHIEIEFPVNPSASAARYGLRTGSSHPTYCISSEQLIRLVAATGEELVGLCYFGDQQSREHIEAQLALKGGATPDSQTGPSDSSSPSKTKH |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |