Scaffold Ga0335074_10001699

Overview

Basic Information

• Taxon OID: 3300032895
• Scaffold ID: Ga0335074_10001699
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29706
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (86.96%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5059
  • Long. (^o): -80.2517

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013999	Metagenome / Metatranscriptome	266	Y
F017111	Metagenome	242	Y
F018762	Metagenome	233	Y
F052529	Metagenome	142	N
F066643	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335074_1000169910	F013999	AGGAGG	MFRVIRRKLRNELRRFARAIEASVVSLLLASPAFAQIGGDRVSSFLSNTLSYAQGLGIFGAGFLVIWAVANIARERPSGKQWAGAGGALLLSSVLQLLRTFAG
Ga0335074_1000169911	F066643	AGGAG	MLKENNCCCVVCQVERNLLNSLSTQIARTQFQAFALNHPILNHFDSPADVIAQLHEHERVETVNHKTWNGILHALVDSIADGTAEEIGQQLLLAAYAPAIHKVYREVCQKFPGLCPEDVAQQGALCFLETARSPEMQTLNGHLPAALSRRFRQSLFRWAIGELRQSLPLEQIAANVPETQARNFEEAVILGQLLSKARRMGVLSASECELVRKFHCDGFHRNELGSGEGGPSALALYFRVYRAINRLRRLGRGEQQVQGTQAALNNTNSKNSSSDAQTFSGEMCIRDSEKGISPEQSHRGPQLESDVPPIAA
Ga0335074_100016994	F052529	GAGG	MRNLARIALLVTLIWIGCSACLAQSHTISAVAQPSSAADSGVVPLSFPYSISTEPHFAIFVEFPKADSIRRIALGDSNYFLAEADKTDPHYAIIKQIEAPTAKGKPPIETNMLVYMASGRVVNITLKAGELDDTAYSINYPVAMAQPKDDSPPVPKEELEKRLRDQERSELADKMIGEVEQVPKSQPGVMAGGLDLRFYAVTRLGTLALVSFDVENTSSGVIDLEDPQINLVTANDNPKDRKKAPAKVEPVEVMQSIVSPKQLAPGARAACLVEFNPPVHDSDQQVVLSIANRAMADKPVNYRLE
Ga0335074_100016995	F017111	AGG	MATTTLTLEETQKAKSDLGDYTEFYSHLAIQARRASRVALVACGVALVALVSAILAQLRPPILLRVQDGQVSPLEGSGVQVAETSTQQQPDNAEKLAFVNTFLNRFVNMDPLTVKRDTTLALNQMTYSLRQHVLMQLNQENFVDTVRENNLTSTLTIKSAELVSGDPYTAIVFGRKRMTTLINGQENEKNLLVKYTIRLAPVPRAAANGWTGLEIADYKEEVLQ
Ga0335074_100016997	F018762	AGGA	MRLRHKKSAVLVLAATFILLVPLTARAFIGTMPVIDWTAIVRIGQEIGISRGTLNTLGLYVQQYSQVNAGVQNGIRLVRGRQLEGILNQTVGSEFPQFQQLQHDFNSALVDPAILRGDLEGTYGTAPATNFPLERKQRIDATDATATLGLLEASRAELVSQQEDLDADDIESDAAVASPGGAAKLSAAANGAMLRSQAYNQRLMGELMRLQALNIARENSLEKEQEQIREGQVSAVSNLVGSMQLSYGIGDLRGQ